ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR156
source: miRBase, original name: mtr-MIR156 (MI0001752)
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGAGAGCACA miRNA* AGCTCTTTCTTCTTCTCTCATT mismatches: 4 bulges: 1 |
pre-miRNA
AGCCATGAATCAGTCCGAGATGACAGAAGAGAGAGAGCACACCCACCTGATTACAAGTAACAAAAAACTACCAACTATCAACATTTTGTCTACTATGAAG
AAAATCACATGTCTAGACTATAGTTACGAATGGAAGATACATTCAATGATGTTTATGAAAATTTGAGACGGTCGAGGACTATAGTTACTCTATCGCATAC
ATTTAATGACAAAAAAAATTGTGTACTCTTATTTATTTTCAATACATCTTCATTCAATTTCTATGCAAGAATCAAAATGCAGTATAAAAAATTGCATTCA
ATATCATGGTAAAAAAATTGTTCAAAAAAAGTAAATATCATGGTAAAAAAATCATTAGATTTTGCAATAAGTAAGAGTCAAGTTTTACCTTGTGAGGAAT
TCCTCCCAACAGAATCATGGGAGCTCTTTCTTCTTCTCTCATTGTGCCCTGCCAGTCTCC
dot-bracket secondary structure
......((..(((..((.(((((.((((((((((((((...((((..(((((...........((((((..............(((((((.....(((..
....))).((((.((((((((((((..(((((.......)))))..((((((((((....))...)))).))))..))))))))....))))..))))..
.......))))))).......((.((((((((((((...........................(((((((.((..((((((((.......))))))))..
.((((((((((........................))))))))))............)))))))))))))))))))))))))))))...(((.((((...
.)))).)))...))))))))).)))))))).)))))).))))).))..)))....))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Northern
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R, New Phytol. 184:85-98(2009)., "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"
AGCCATGAATCAGTCCGAGATGACAGAAGAGAGAGAGCACACCCACCTGATTACAAGTAACAAAAAACTACCAACTATCAACATTTTGTCTACTATGAAG
AAAATCACATGTCTAGACTATAGTTACGAATGGAAGATACATTCAATGATGTTTATGAAAATTTGAGACGGTCGAGGACTATAGTTACTCTATCGCATAC
ATTTAATGACAAAAAAAATTGTGTACTCTTATTTATTTTCAATACATCTTCATTCAATTTCTATGCAAGAATCAAAATGCAGTATAAAAAATTGCATTCA
ATATCATGGTAAAAAAATTGTTCAAAAAAAGTAAATATCATGGTAAAAAAATCATTAGATTTTGCAATAAGTAAGAGTCAAGTTTTACCTTGTGAGGAAT
TCCTCCCAACAGAATCATGGGAGCTCTTTCTTCTTCTCTCATTGTGCCCTGCCAGTCTCC
dot-bracket secondary structure
......((..(((..((.(((((.((((((((((((((...((((..(((((...........((((((..............(((((((.....(((..
....))).((((.((((((((((((..(((((.......)))))..((((((((((....))...)))).))))..))))))))....))))..))))..
.......))))))).......((.((((((((((((...........................(((((((.((..((((((((.......))))))))..
.((((((((((........................))))))))))............)))))))))))))))))))))))))))))...(((.((((...
.)))).)))...))))))))).)))))))).)))))).))))).))..)))....))...
SIMILARITIES| miRBase zma-MIR156j: 0.00002 PMRD cpt-miR156b: 0.0000004 microPC miR157: 0.0004 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Northern
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R, New Phytol. 184:85-98(2009)., "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"
