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Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST040658
species: Medicago truncatula
miRNA family: MIR160
source: miRBase, original name: mtr-MIR160 (MI0001739)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCCTGGCTCCCTGTATGCCA

miRNA*
GCGTGCGAGGAGCCATGCATG

mismatches: 2
bulges: 0

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pre-miRNA
AGATATATATACTAATTGCGTGCCTGGCTCCCTGTATGCCATTTGTAGAGTTCATCAAGATGTTGATGACTTTAATGAATGGCGTGCGAGGAGCCATGCA
TG
TTGTGTATATTTTCTAT


dot-bracket secondary structure
(((.((((((((.....((((((.(((((((.(((((((((((..((((((.((((((....))))))))))).)..))))))))))).))))))).)))
))
).))))))))..)))..



SIMILARITIES
miRBase mtr-MIR160d: 0.0000000000004

PMRD mtr-miR160d: 0.0000000000004

microPC miR160: 0.00000000002
UniProt no hits

RFAM mir-160: 0.000000000007

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454, Northern

references

[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R, New Phytol. 184:85-98(2009)., "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"




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