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Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST040678
species: Medicago truncatula
miRNA family: MIR169
source: miRBase, original name: mtr-MIR169a (MI0001741)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CAGCCAAGGATGACTTGCCGA

miRNA*
GGCAAGTTGTCCTTGGCTATG

mismatches: 4
bulges: 0

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pre-miRNA
AAGAGGCAGAGAGAGTAATGCAGCCAAGGATGACTTGCCGACAACATTGGCGAATGTTCATGTGATTTCTGCCTCATTGTGCCGGCAAGTTGTCCTTGGC
TATG
TTAGTCTCTCATCTTCT


dot-bracket secondary structure
.(((((..((((((.((((..(((((((((..((((((((...(((..((((((...((....)).))).)))....)))..))))))))..))))))))
)..)
))).))))))..)))))



SIMILARITIES
miRBase mtr-MIR169b: 1e-59

PMRD mtr-miR169a: 2e-64

microPC miR169: 0.00002
UniProt no hits

RFAM MIR169_2: 0.000007

Identical with: mtr-miR169a from PMRD (MNEST048717)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Northern

references

[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R, New Phytol. 184:85-98(2009)., "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"




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