miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Arachis duranensis
,
Arachis hypogaea
,
Arachis ipaensis
,
Glycine soja
,
Glycyrrhiza uralensis
,
Lotus japonicus
,
Medicago sativa
,
Phaseolus acutifolius
,
Phaseolus coccineus
,
Pisum sativum
,
Trifolium pratense
,
Cajanus cajan
,
Cicer arietinum
,
Glycine max
,
Vigna unguiculata
,
Medicago truncatula
,
Phaseolus vulgaris
ABOUT THIS RECORD
ID:
MNEST040692
species:
Medicago truncatula
miRNA family:
MIR169_6
source:
miRBase, original name:
mtr-MIR169o
(
MI0005637
)
Taxonomy by NCBI:
Medicago truncatula
Medicago
Trifolieae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGAGCCAAAGATGACTTGCCG
miRNA*
GCAGTTGTCATTGGTTCATG
mismatches:
3
bulges:
1
View larger
pre-miRNA
AGATT
TGAGCCAAAGATGACTTGCCG
GCATGCTGCCTGAAAAGCAAGAAGGGTGTTGTTTTGCTG
GCAGTTGTCATTGGTTCATG
TTTG
dot-bracket secondary structure
((((.
((((((((.((..(((.((((
(((.((.((((............))))...))..)))))
)))))..)).)))))))).)
))).
SIMILARITIES
miRBase
mtr-MIR169n
:
2e-45
PMRD
vvi-miR169p
:
0.00007
microPC
no hits
UniProt
no hits
RFAM
MIR169_2: 3e-44
Identical with:
mtr-MIR169n
from miRBase (
MNEST040691
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
degradome data
download this record
references
[
1
] Bonnet E,
Unpublished (2007).
,