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Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST040702
species: Medicago truncatula
miRNA family: MIR172
source: miRBase, original name: mtr-MIR172 (MI0005600)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AGAATCCTGATGATGCTGCAG

miRNA*
 GGAGCATCATCAGGATTCACA

mismatches: 3
bulges: 0
View larger
pre-miRNA
 GCCGGTGGAGCATCATCAGGATTCACAAGATTTTGAAGGGTTTAATTTGTTTTGATTGTTTCAAATAGATTAGCCCTTTGACATATGAGAATCCTGATGA
TGCTGCAGCTGCA

dot-bracket secondary structure
((.(.((.((((((((((((((((.((..((.(..(((((((.(((((((((.((.....))))))))))))))))))..).)).)).))))))))))))
)))).)).).)).


SIMILARITIES
miRBase ath-MIR172c: 0.00000009

PMRD ath-miRf11051-akr: 0.00000009

microPC miR172: 0.00009		UniProt no hits

RFAM mir-172: 2e-58

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454, Northern

references
[1] Bonnet E, Unpublished (2007).,
[2] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R, New Phytol. 184:85-98(2009)., "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"



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