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Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST040711
species: Medicago truncatula
miRNA family: MIR395
source: miRBase, original name: mtr-MIR395d (MI0005071)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATGAAGTGTTTGGGGGAACTC

miRNA*
GTTCCTTTGAACGCTTCATGC

mismatches: 2
bulges: 0

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pre-miRNA
GAGTTCCTTTGAACGCTTCATGCATGAGAATATCTATTTGGTCTAAAATCCATTAGAAAAATAGTTCTTCTTAAATGAAGTGTTTGGGGGAACTC

dot-bracket secondary structure
(((((((((..((((((((((...((((((...((((((..(((((......))))).))))))...)))))).))))))))))..)))))))))


SIMILARITIES
miRBase mtr-MIR395q: 5e-49

PMRD mtr-miR395d: 5e-49

microPC miR395: 0.00007
UniProt no hits

RFAM mir-395: 9e-48

Identical with: mtr-MIR395q from miRBase (MNEST040724)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L, Cell Res. 15:631-638(2005)., "Molecular evolution of the rice miR395 gene family"




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