miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Arachis duranensis
,
Arachis hypogaea
,
Arachis ipaensis
,
Glycine soja
,
Glycyrrhiza uralensis
,
Lotus japonicus
,
Medicago sativa
,
Phaseolus acutifolius
,
Phaseolus coccineus
,
Pisum sativum
,
Trifolium pratense
,
Cajanus cajan
,
Cicer arietinum
,
Glycine max
,
Vigna unguiculata
,
Medicago truncatula
,
Phaseolus vulgaris
ABOUT THIS RECORD
ID:
MNEST040719
species:
Medicago truncatula
miRNA family:
MIR395
source:
miRBase, original name:
mtr-MIR395l
(
MI0005079
)
Taxonomy by NCBI:
Medicago truncatula
Medicago
Trifolieae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ATGAAGTGTTTGGGGGAACTC
miRNA*
GTTCCTTTGAACGCTTCATGC
mismatches:
2
bulges:
0
View larger
pre-miRNA
GA
GTTCCTTTGAACGCTTCATGC
ATGAGAATATCTATCTATTTGGTCTAAAGTCCATTAGAAAAGATAGCCATTTTTTCA
ATGAAGTGTTTGGGGGAACT
C
dot-bracket secondary structure
((
(((((((..((((((((((..
..((((((..((((((...(((.(....).))).......))))))..))))))...
))))))))))..))))))))
)
SIMILARITIES
miRBase
mtr-MIR395r
:
1e-52
PMRD
mtr-miR395n
:
1e-52
microPC
miR395
:
0.00008
UniProt
no hits
RFAM
mir-395: 2e-51
Identical with:
mtr-MIR395r
from miRBase (
MNEST040725
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L,
Cell Res. 15:631-638(2005).
,
"Molecular evolution of the rice miR395 gene family"