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Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST040732
species: Medicago truncatula
miRNA family: MIR399
source: miRBase, original name: mtr-MIR399b (MI0001743)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCCAAAGGAGAGCTGCCCTG

miRNA*
 GGGCATGTCTCTATTGGTAGG

mismatches: 3
bulges: 0
View larger
pre-miRNA
 TCATAGGGCATGTCTCTATTGGTAGGTGATATGGTGATATTTCATTTGAATTAGAGGCTTCAGAAATTCACTTGCCAAAGGAGAGCTGCCCTGTGAGTGT
TTAGCTTAAACA

dot-bracket secondary structure
((((((((((..(((((.(((((((((((.....(((..((((..........))))..))).....))))))))))).)))))..))))))))))..((
(((...))))).


SIMILARITIES
miRBase mtr-MIR399d: 1e-37

PMRD mtr-miR399b: 4e-59

microPC miR399: 0.00008		UniProt no hits

RFAM mir-399: 0.0000004

Identical with: mtr-miR399b from PMRD (MNEST048751)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"



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