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Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST040750
species: Medicago truncatula
miRNA family: MIR1509
source: miRBase, original name: mtr-MIR1509b (MI0011880)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTAATCTAGGAAATTACACTCG

miRNA*
AGTGTATTTCCTTGATTAAAG

mismatches: 2
bulges: 1

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pre-miRNA
TTGATCCATTGCATTCTTTTAATCTAGGAAATTACACTCGAGTGACCATGAGATGAGGATATTATCTCTCTCTCTCTCTAGTGTATTTCCTTGATTAAAG
AAATTCATTGGATCAT


dot-bracket secondary structure
.(((((((.((.(((..(((((((.(((((((.(((((.(((.((....(((((((.....)))))))....)).))).)))))))))))).))))))).
.))).)).))))))).



SIMILARITIES
miRBase mtr-MIR1509: 0.00009

PMRD mtr-miR1509: 0.00009

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454

references

[1] Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M, Plant Cell. 21:2780-2796(2009)., "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules"




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