ABOUT THIS RECORDspecies: Medicago truncatula
source: miRBase, original name: mtr-MIR2086 (MI0010539)
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GACATGAATGCAGAACTGGAA miRNA* CCAGTTCTGCGTTCATGTCCC mismatches: 0 bulges: 0 |
pre-miRNA
TTCACCAACTTTCCAGTTCTGCGTTCATGTCCCCTGCAGCTTGACTTTAGGGGAAATCGAGCAACAAGGGACATGAATGCAGAACTGGAAAGATGGTCTG
AG
dot-bracket secondary structure
...((((.(((((((((((((((((((((((((.((..((((((.(((....))).))))))..)).))))))))))))))))))))))))).))))...
..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern, Solexa, 454
references
[1] Szittya G, Moxon S, Santos DM, Jing R, Fevereiro MP, Moulton V, Dalmay T, BMC Genomics. 9:593(2008)., "High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families"
[2] Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M, Plant Cell. 21:2780-2796(2009)., "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules"
TTCACCAACTTTCCAGTTCTGCGTTCATGTCCCCTGCAGCTTGACTTTAGGGGAAATCGAGCAACAAGGGACATGAATGCAGAACTGGAAAGATGGTCTG
AG
dot-bracket secondary structure
...((((.(((((((((((((((((((((((((.((..((((((.(((....))).))))))..)).))))))))))))))))))))))))).))))...
..
SIMILARITIES| miRBase no hits PMRD mtr-miR2086: 4e-53 microPC no hits | UniProt no hits RFAM no hits |
Identical with: mtr-miR2086 from PMRD (MNEST048771) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern, Solexa, 454
references
[1] Szittya G, Moxon S, Santos DM, Jing R, Fevereiro MP, Moulton V, Dalmay T, BMC Genomics. 9:593(2008)., "High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families"
[2] Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M, Plant Cell. 21:2780-2796(2009)., "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules"
