ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIRf469
source: miRNEST
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTGTAATCCCAGCACTTTGG miRNA* GAGTAGCTGGGACTAGAGGCA mismatches: 4 bulges: 0 |
pre-miRNA
CCTCAGCCTCCTGAGTAGCTGGGACTAGAGGCACACATCACCACACTTGGCTAGTATTTAAATTTTTCTGTAGAAGTCCAGGCGCAGTGGCTCATGCCTG
TAATCCCAGCACTTTGGGAGGCCGAA
dot-bracket secondary structure
..((.((((((((((..(((((((.((.(((((....((((....(((((((..(((..((....))..)))..)).)))))....))))....))))).
)).)))))))..)))))))))).)).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
CCTCAGCCTCCTGAGTAGCTGGGACTAGAGGCACACATCACCACACTTGGCTAGTATTTAAATTTTTCTGTAGAAGTCCAGGCGCAGTGGCTCATGCCTG
TAATCCCAGCACTTTGGGAGGCCGAA
dot-bracket secondary structure
..((.((((((((((..(((((((.((.(((((....((((....(((((((..(((..((....))..)))..)).)))))....))))....))))).
)).)))))))..)))))))))).)).
SIMILARITIES| miRBase hsa-mir-619: 0.0000000000001 PMRD ptc-miRf12412-akr: 0.00000000003 microPC no hits | UniProt no hits RFAM Metazoa_SRP: 2e-18 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
