miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST008428
species: Medicago truncatula
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCATCGTCATCATCATCATCG

miRNA*
GTGAAGGAAGTGTGGTTGCT

mismatches: 4
bulges: 1

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pre-miRNA
CTGTCATCGTCATCGTCATCGTCATCGTCATCGTCATCATCATCATCGGAAAGTAAAAATAAGTTAGCACTGAACATGGGTAAAAGTAAAACAATTGAGT
TGTATGGATTCCCTTCTTTTGTGAACGTGTCTCAAGTAAAGATATTTGTAGAGCATTATACCGGTGAAGGAAGTGTGGTTGCTATGAAGATTAGAGTAGG
CAATGGC


dot-bracket secondary structure
..(((((.(((.((...(((.((((.((.((((.(((..((.(((((((...((((......(((.(((..(((...(((.....(((.(((......))
).))).....))))))...))).))).(((((((((((....)))))).))).)))))).))))))).))..))))))).)).)))).)))..))...))
).)))))



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt sp|Q9LQV2|RDR1_ARATH: 0.0005

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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