miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Acyrthosiphon pisum, Aphis gossypii, Nilaparvata lugens, Myzus persicae, Peregrinus maidis, Rhodnius prolixus, Frankliniella occidentalis



ABOUT THIS RECORD

ID: MNEST035088
species: Acyrthosiphon pisum
miRNA family: mir-927
source: miRBase, original name: api-mir-927 (MI0013942)

Taxonomy by NCBI:
Acyrthosiphon pisum Acyrthosiphon Macrosiphini Aphidinae Aphididae Aphidoidea Aphidomorpha Aphidiformes Sternorrhyncha Hemiptera Paraneoptera Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTTAGAATTCCTACGCTTTACC

miRNA*
CAAAGCGTTTGAATTGTAAAAC

mismatches: 4
bulges: 0

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pre-miRNA
TTTAGAATTCCTACGCTTTACCGTACAATTTTATCGGCAAAGCGTTTGAATTGTAAAAC

dot-bracket secondary structure
((((.(((((..(((((((.(((...........))).)))))))..))))).))))..


SIMILARITIES
miRBase aae-mir-927: 0.0000006

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-927: 1e-26

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa
deep sequencing data evidence

references

[1] Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Mereau A, Nicolas J, Tagu D, Jaubert-Possamai S, BMC Genomics. 11:281(2010)., "Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum"




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