ABOUT THIS RECORDspecies: Pinus taeda
source: PMRD, original name: pta-miR163a
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGAAGACTTGGAGCTTCGA miRNA* AGAGTTCCTCC mismatches: 15 bulges: 0 |
pre-miRNA
TGAAGAAGACTTGGAGCTTCGACTTGGACTGGCAGTTACAGGAAGGACATCAGCAGAGCACAATCCCCGTCGCAGGCATGGTAGAGTTCCTCC
dot-bracket secondary structure
............(((((((...(((...(((.......)))..)))..((((((...((((.......)).))..)).)))).)))))))...
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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TGAAGAAGACTTGGAGCTTCGACTTGGACTGGCAGTTACAGGAAGGACATCAGCAGAGCACAATCCCCGTCGCAGGCATGGTAGAGTTCCTCC
dot-bracket secondary structure
............(((((((...(((...(((.......)))..)))..((((((...((((.......)).))..)).)))).)))))))...
SIMILARITIES| miRBase no hits PMRD pta-miR163b: 7e-48 microPC no hits | UniProt no hits RFAM no hits |
Identical with: pta-miR163b from PMRD (MNEST051557) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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