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Species belonging to selected taxon:
Agrostis stolonifera
,
Oryza sativa
,
Avena barbata
,
Avena sativa
,
Cynodon dactylon
,
Eragrostis curvula
,
Festuca arundinacea
,
Festuca pratensis
,
Hordeum vulgare
,
Hordeum vulgare subsp. spontaneum
,
Leymus cinereus x Leymus triticoides
,
Lolium perenne
,
Panicum virgatum
,
Pseudoroegneria spicata
,
Saccharum hybrid cultivar CoS 767
,
Saccharum hybrid cultivar SP70-1143
,
Saccharum officinarum
,
Sorghum propinquum
,
Triticum monococcum
,
Triticum turgidum subsp. durum
,
Cenchrus ciliaris
,
Brachypodium distachyon
,
Zea mays
,
Triticum aestivum
,
Sorghum bicolor
ABOUT THIS RECORD
ID:
MNEST008469
species:
Sorghum bicolor
miRNA family:
MIRf10
source:
miRNEST
Taxonomy by NCBI:
Sorghum bicolor
Sorghum
Andropogoneae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CTCAAAAGATTCGTCTCGTGA
miRNA*
GCGAGACAAATATTTTGAGTC
mismatches:
2
bulges:
0
View larger
pre-miRNA
ACTTATAATTT
GCGAGACAAATATTTTGAGTC
TATTTGTGACATACAAACGAACAATGTTTATTTTATAAAATTTTTTAGAACTAATTATACTTCTAAGC
ATGAACAACTACATGATGATACCGAGAAACCTAGGCCTTGTTTAGTTCCAAAATTTTTTGCAAAATCGACACTGTAGCACTTTTGTTTGTACTTGACAAA
TATTGTCCAACCATGGACTAACTAGGA
CTCAAAAGATTCGTCTCGTGA
TTTACAGC
dot-bracket secondary structure
.....(((.((
(((((((.(((.(((((((((
(((((((....((((((((((((.((((.(((((.(((((..((((.(((((((.((..(((((...(
(((........)))).........))).....))....)).))))))).))))..))))).))))).)))).))).......)))))))))....)))))
).(((((((....))))).))...)))
))))))).))).)))))))))
.)))....
SIMILARITIES
miRBase
osa-MIR2124a
:
0.00001
PMRD
osa-miRf12089-akr
:
0.00005
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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