miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Cynodon dactylon, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST048651
species: Hordeum vulgare
miRNA family: MIR396
source: PMRD, original name: hvu-miR396

Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCCACAGGCTTTCTTGAACTG

miRNA*
GTTCAAGAAAGTCCTTGGAAA

mismatches: 2
bulges: 0

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pre-miRNA
GCGGCCATGCTCTCCACAGGCTTTCTTGAACTGTCAACTCGCGCGCGCCAGCCATCCATGGCCTGCTGCGTTGATGGTTCAAGAAAGTCCTTGGAAAACA
TGCCCGC


dot-bracket secondary structure
((((.((((...((((..((((((((((((((((((((.((.(((.((((........)))).))))).))))))))))))))))))))..))))...))
)).))))



SIMILARITIES
miRBase far-MIR396: 6e-18

PMRD far-miR396: 6e-18

microPC miR396: 0.000000000000006
UniProt no hits

RFAM MIR396: 0.000000000006

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
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