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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Cynodon dactylon, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST001793
species: Panicum virgatum
miRNA family: MIR408
source: miRNEST

Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCACTGCCTCTTCCCTGGCT

miRNA*
ACAGGGATGAGGCAGAGCATG

mismatches: 3
bulges: 0

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pre-miRNA
CTGGATTGGAGACAGGGATGAGGCAGAGCATGGGATGGGGCCATCAACAAAAAAAAAACCGTTTCTTCCACTGCGAAAGAAGAGGGAGAGGGAGTTTGTG
TGAGGTTCTTCATCAGGCACAAAAAAGATTGAGAGCTCCGCTGGTGTTGTTGCTCCCTCCCCTGCACTGCCTCTTCCCTGGCTCCCCCATC


dot-bracket secondary structure
.(((...((((.((((((.(((((((.(((.((((.(((((...(((((......((((..((((((((.((........)).))))))))..))))..(
((.(((((((.(((............))).))))))).)))...)))))..))))).)))).))).))))))).)))))).)))).)))..



SIMILARITIES
miRBase sof-MIR408c: 1e-17

PMRD sof-miR408c: 1e-17

microPC miR408: 0.0002
UniProt no hits

RFAM MIR408: 2e-16
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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