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Species belonging to selected taxon:

Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Populus trichocarpa, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST002177
species: Populus tremula x Populus alba
miRNA family: MIR393
source: miRNEST

Taxonomy by NCBI:
Populus tremula x Populus alba Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCCAAAGGGATCGCATTGATC

miRNA*
TCATGCGATCCCTTAGGAAT

mismatches: 1
bulges: 1

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pre-miRNA
TGTTATCAAATCCTTAGTGCAGTTGGAGTGTTCCAAAGGGATCGCATTGATCTAATGACTTTCGATGTCTATATGATGTTAATGTTTAGTCATTTCATTG
GATCATGCGATCCCTTAGGAATTTTCCAGCAAATAGCTCTAAATTTTCAC


dot-bracket secondary structure
.............((((.((.(((((((.(((((.((((((((((((.((((((((((.....((((.(((.((.........)).))).))))))))))
)))))))))))))))).))))).))))))).....)).))))........



SIMILARITIES
miRBase ptc-MIR393d: 1e-53

PMRD ptc-miR393d: 1e-53

microPC miR393: 3e-45
UniProt no hits

RFAM no hits
most similar mature miRNAs

Identical with: miR393 from microPC (MNEST046398)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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