miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Macaca fascicularis, Papio anubis, Homo sapiens, Pongo abelii, Macaca nemestrina, Pan troglodytes verus, Macaca mulatta



ABOUT THIS RECORD

ID: MNEST028224
species: Macaca nemestrina
miRNA family: mir-183
source: miRBase, original name: mne-mir-183 (MI0003092)

Taxonomy by NCBI:
Macaca nemestrina Macaca Cercopithecinae Cercopithecidae Cercopithecoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TATGGCACTGGTAGAATTCACTG

miRNA*
GTGAATTACCGAAGGGCCATAAA

mismatches: 2
bulges: 4

View larger
pre-miRNA
CCGCAGAACGTGACTCCTGTTCTGTGTATGGCACTGGTAGAATTCACTGTGAACAGTCTCGGTCAGTGAATTACCGAAGGGCCATAAACAGAGCAGAGAC
AGATCCACGA


dot-bracket secondary structure
........((((..(((((((((((.((((((..(((((..(((((((((((......)))..)))))))))))))....)))))).)))))))))....
.))..)))).



SIMILARITIES
miRBase mml-mir-183: 6e-58

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-183: 2e-45

Identical with: bta-mir-183 from miRBase (MNEST033251)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references

[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"




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