ABOUT THIS RECORDspecies: Pristionchus pacificus
miRNA family: miR-1410
source: miRNEST
Taxonomy by NCBI:
Pristionchus pacificus Pristionchus Neodiplogasteridae Diplogasterida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGGACGGAGTCGTGAGGGGAA miRNA* ATCTCATCTTTTTGCCCAG mismatches: 3 bulges: 2 |
pre-miRNA
GGGCTTCCGATGGGACGGAGTCGTGAGGGGAACGGGATTCGAGGGGCAGCTGGCCATATCAGGAAATGCGAAGAGGGCCGCCGAACAGGAATACTATCAG
AATATTCAATTGTACGAGTAGGGCAATCAATAAGTTGTCGATTTCACTCATTATCTCATCTTTTTGCCCAGTTGAACTG
dot-bracket secondary structure
.((.(((...((((.(((((..((((((..((.(((....((..(((.....)))...))..(((((.(((.((..(((((((.(((.(((((.......
..)))))...))).)).))..)))..)).........)))))))).))).)).))))))..)))))))))...))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
GGGCTTCCGATGGGACGGAGTCGTGAGGGGAACGGGATTCGAGGGGCAGCTGGCCATATCAGGAAATGCGAAGAGGGCCGCCGAACAGGAATACTATCAG
AATATTCAATTGTACGAGTAGGGCAATCAATAAGTTGTCGATTTCACTCATTATCTCATCTTTTTGCCCAGTTGAACTG
dot-bracket secondary structure
.((.(((...((((.(((((..((((((..((.(((....((..(((.....)))...))..(((((.(((.((..(((((((.(((.(((((.......
..)))))...))).)).))..)))..)).........)))))))).))).)).))))))..)))))))))...))))).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|P30640|BUD13_CAEEL: 0.000004 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
