miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Caenorhabditis elegans, Ancylostoma caninum, Ascaris suum, Heterorhabditis bacteriophora, Brachionus plicatilis, Pristionchus pacificus, Caenorhabditis japonica, Caenorhabditis brenneri, Strongyloides ratti, Brugia malayi, Trichinella spiralis, Meloidogyne hapla, Heterodera glycines, Meloidogyne incognita, Caenorhabditis remanei, Trichinella pseudospiralis, Onchocerca volvulus, Nippostrongylus brasiliensis, Meloidogyne chitwoodi, Globodera rostochiensis, Strongyloides stercoralis, Ancylostoma ceylanicum



ABOUT THIS RECORD

ID: MNEST009133
species: Brachionus plicatilis
miRNA family: mir-392
source: miRNEST

Taxonomy by NCBI:
Brachionus plicatilis Brachionus Brachionidae Ploimida Monogononta Rotifera Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTTCATCGATCATGTGATCTC

miRNA*
 GATCGAATGATTGATGAAATA

mismatches: 3
bulges: 0
View larger
pre-miRNA
 AATTGATCGAATGATTGATGAAATATCAACTGATTGTTGAGCACTGGGCCGTCTGAATTCGACTCAGAGCACAGTCAAAAATTTGATATTGAAACCGAAT
TAAATGATATTAATTCTTTTAAATTTGAAAATCATTTTAATTTAGATTTACTTTTCATCGATCATGTGATCTCA

dot-bracket secondary structure
....(((((.((((((((((((((((((..(((((((...((.(((((.((........)).))))).)))))))))..((((((..........)))))
)...))))).(((.(((.(((((..(((...))).)))))...))).)))..))))))))))))).)))))...


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record




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