miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Caenorhabditis elegans, Ancylostoma caninum, Ascaris suum, Heterorhabditis bacteriophora, Brachionus plicatilis, Pristionchus pacificus, Caenorhabditis japonica, Caenorhabditis brenneri, Strongyloides ratti, Brugia malayi, Trichinella spiralis, Meloidogyne hapla, Heterodera glycines, Meloidogyne incognita, Caenorhabditis remanei, Trichinella pseudospiralis, Onchocerca volvulus, Nippostrongylus brasiliensis, Meloidogyne chitwoodi, Globodera rostochiensis, Strongyloides stercoralis, Ancylostoma ceylanicum



ABOUT THIS RECORD

ID: MNEST009778
species: Nippostrongylus brasiliensis
miRNA family: miR-3246
source: miRNEST

Taxonomy by NCBI:
Nippostrongylus brasiliensis Nippostrongylus Nippostrongylinae Heligmonellidae Trichostrongyloidea Strongylida Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTTCTATCTGAACATTGTGTT

miRNA*
CACTGTGTTAGGGTACGTAATA

mismatches: 5
bulges: 1

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pre-miRNA
AATATCACTGTGTTAGGGTACGTAATAATAAATTTATTTCTATCTGAACATTGTGTTAT

dot-bracket secondary structure
.(((.(((.(((((.(((((...(((((.....)))))..))))).))))).))).)))


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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