miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Caenorhabditis elegans, Ancylostoma caninum, Ascaris suum, Heterorhabditis bacteriophora, Brachionus plicatilis, Pristionchus pacificus, Caenorhabditis japonica, Caenorhabditis brenneri, Strongyloides ratti, Brugia malayi, Trichinella spiralis, Meloidogyne hapla, Heterodera glycines, Meloidogyne incognita, Caenorhabditis remanei, Trichinella pseudospiralis, Onchocerca volvulus, Nippostrongylus brasiliensis, Meloidogyne chitwoodi, Globodera rostochiensis, Strongyloides stercoralis, Ancylostoma ceylanicum



ABOUT THIS RECORD

ID: MNEST009504
species: Trichinella spiralis
miRNA family: mir-1322
source: miRNEST

Taxonomy by NCBI:
Trichinella spiralis Trichinella Trichinellidae Trichocephalida Enoplia Enoplea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GCTGCTGCTGCTGTTGCTGCT

miRNA*
TCAGCAACAGTTCCAGTGGCAG

mismatches: 2
bulges: 1

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pre-miRNA
CCGCTGCTTTTGCTGCTGCTGCTGTTGCTGCTGCTCTTTTGCCATTTCTCTTCACACGCTTTCCATTCTCCCAGGCAAAATACAATTTGATGAACACGTT
TGTTGATCAAAAAGAAGAAGTGATTTTTTCAAAAAGCCGGTCAGCAACAGTTCCAGTGGCAGATCAGATT


dot-bracket secondary structure
...(((..((((((((((..(((((((((((((((.(((((((..............................))))))).....((((((.((((....
)))).))))))..((((((.....))))))....)).))).))))))))))..)))))))))).)))...



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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