ABOUT THIS RECORDspecies: Nasonia giraulti
miRNA family: mir-1
source: miRBase, original name: ngi-mir-1 (MI0016626)
Taxonomy by NCBI:
Nasonia giraulti Nasonia Pteromalinae Pteromalidae Chalcidoidea Chaldicoidea group Apocrita Hymenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAATGTAAAGAAGTATGGAG miRNA* CCGTGCTTCCTTACTTCCCATA mismatches: 4 bulges: 0 |
pre-miRNA
CTGTTCCGTGCTTCCTTACTTCCCATAGTGCACGTGACGTATGGAATGTAAAGAAGTATGGAGCCGCGC
dot-bracket secondary structure
..((((((((((((.((((...(((((((.......)).)))))...)))).)))))))))))).....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Sathyamurthy G, Swamy NR, Int J Insect Sci. 2:1-13(2010)., "Computational Identification and Characterization of Putative miRNAs in Nasonia Species"
CTGTTCCGTGCTTCCTTACTTCCCATAGTGCACGTGACGTATGGAATGTAAAGAAGTATGGAGCCGCGC
dot-bracket secondary structure
..((((((((((((.((((...(((((((.......)).)))))...)))).)))))))))))).....
SIMILARITIES| miRBase nvi-mir-1: 1e-33 PMRD no hits microPC no hits | UniProt no hits RFAM mir-1: 2e-32 |
Identical with: nvi-mir-1 from miRBase (MNEST037630) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Sathyamurthy G, Swamy NR, Int J Insect Sci. 2:1-13(2010)., "Computational Identification and Characterization of Putative miRNAs in Nasonia Species"
