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Species belonging to selected taxon:

Nasonia vitripennis, Nasonia giraulti



ABOUT THIS RECORD

ID: MNEST037574
species: Nasonia giraulti
miRNA family: mir-29
source: miRBase, original name: ngi-mir-29b (MI0016642)

Taxonomy by NCBI:
Nasonia giraulti Nasonia Pteromalinae Pteromalidae Chalcidoidea Chaldicoidea group Apocrita Hymenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TAGCACCATTTGAAATCAGT

miRNA*
TGACTTCGGTGCGTGCTGGG

mismatches: 1
bulges: 2

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pre-miRNA
AAGAATTAAGATAGCAGAGGTACTGACTTCGGTGCGTGCTGGGGTTACCGATCAAGCGCCTAGCACCATTTGAAATCAGTACTACTCGTCTTAG

dot-bracket secondary structure
......((((((.(.((.((((((((.(((((((.(((((((((((........))).)))))))))).))))).)))))))).))))))))).


SIMILARITIES
miRBase nvi-mir-29b: 2e-48

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

Identical with: nvi-mir-29b from miRBase (MNEST037642)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Sathyamurthy G, Swamy NR, Int J Insect Sci. 2:1-13(2010)., "Computational Identification and Characterization of Putative miRNAs in Nasonia Species"




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