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Species belonging to selected taxon:

Nasonia vitripennis, Nasonia giraulti



ABOUT THIS RECORD

ID: MNEST037576
species: Nasonia giraulti
miRNA family: mir-34
source: miRBase, original name: ngi-mir-34 (MI0016631)

Taxonomy by NCBI:
Nasonia giraulti Nasonia Pteromalinae Pteromalidae Chalcidoidea Chaldicoidea group Apocrita Hymenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GGCAGTGTGGTTAGCTGGTTG

miRNA*
ACCGCTATCGGCACTGCAAT

mismatches: 3
bulges: 1

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pre-miRNA
GGCGTGTTGGCAGTGTGGTTAGCTGGTTGTGTAGATTATAGAAAGCACGACCGCTATCGGCACTGCAATTATGACGGTCG

dot-bracket secondary structure
(((.((((.(((((((.(.((((.((((((((............)))))))))))).).)))))))......))))))).


SIMILARITIES
miRBase nlo-mir-34: 4e-40

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-449: 4e-34

Identical with: nlo-mir-34 from miRBase (MNEST037608)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Sathyamurthy G, Swamy NR, Int J Insect Sci. 2:1-13(2010)., "Computational Identification and Characterization of Putative miRNAs in Nasonia Species"




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