ABOUT THIS RECORDspecies: Nasonia giraulti
miRNA family: mir-219
source: miRBase, original name: ngi-mir-219 (MI0016632)
Taxonomy by NCBI:
Nasonia giraulti Nasonia Pteromalinae Pteromalidae Chalcidoidea Chaldicoidea group Apocrita Hymenoptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGTCCAAACGCAATTCTTG miRNA* AGAATTGTGTGGGGACATCAGC mismatches: 2 bulges: 1 |
pre-miRNA
TGTCTCGGGCTATGATTGTCCAAACGCAATTCTTGTCTGTGCCTTGAGATACCAAGAATTGTGTGGGGACATCAGCGCTCG
dot-bracket secondary structure
.....(((((..((((.((((..(((((((((((((((........)))...))))))))))))..))))))))..)))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Sathyamurthy G, Swamy NR, Int J Insect Sci. 2:1-13(2010)., "Computational Identification and Characterization of Putative miRNAs in Nasonia Species"
TGTCTCGGGCTATGATTGTCCAAACGCAATTCTTGTCTGTGCCTTGAGATACCAAGAATTGTGTGGGGACATCAGCGCTCG
dot-bracket secondary structure
.....(((((..((((.((((..(((((((((((((((........)))...))))))))))))..))))))))..)))))
SIMILARITIES| miRBase nlo-mir-219: 9e-41 PMRD no hits microPC no hits | UniProt no hits RFAM mir-219: 4e-34 |
Identical with: nvi-mir-219 from miRBase (MNEST037656) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Sathyamurthy G, Swamy NR, Int J Insect Sci. 2:1-13(2010)., "Computational Identification and Characterization of Putative miRNAs in Nasonia Species"
