miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Aquilegia formosa x Aquilegia pubescens
,
Eschscholzia californica
,
Papaver somniferum
ABOUT THIS RECORD
ID:
MNEST001870
species:
Papaver somniferum
miRNA family:
MIRf341
source:
miRNEST
Taxonomy by NCBI:
Papaver somniferum
Papaver
Papaveraceae
Ranunculales
stem eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TACTACTCCCTCCGTCCTATT
miRNA*
TATGACGGAGGGAGTAAAATA
mismatches:
4
bulges:
0
View larger
pre-miRNA
ACGAAAATTAA
TACTACTCCCTCCGTCCTATT
TTAGATGAAGGGGAAGGGATTTTTTCTAGTACCAAAATAGATGAAGGTTTCCATAATTTTCACACTTT
CTTCCTAATTTGACCCTGCATTGGAATCAACCACTAGAAACAAGAAACAAAAAACTAAGAGATTTAAATATTTTAACAATTATTATTAAGGGATATATAT
GAAAAAAATTTAATCTCTTTCCATTTTCTTAATCTACGTGAAAACACCTTCCCCTTTATCTAAAA
TATGACGGAGGGAGTAAAATA
ATATGAAA
dot-bracket secondary structure
...........
...(((((((((((((.((((
(((((((((((((((((..(((((((((((..((((.(((..((((((...............)))))
)...))).)))).......))))))).....(((((((...((((((.........((((((((.((((.((((....((...((((....))))...))
..)))).)))))))))))).....))))))..)))).)))))))..)))))))))))))))))))
)).))))))))))))).....
........
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record