miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis



ABOUT THIS RECORD

ID: MNEST002418
species: Raphanus sativus var. oleiformis
miRNA family: MIRf1147
source: miRNEST

Taxonomy by NCBI:
Raphanus sativus var. oleiformis Raphanus sativus Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TACTGAACCGGTCCGGTTTAG

miRNA*
ATACTGTTCGTTCTATATT

mismatches: 4
bulges: 2

View larger
pre-miRNA
AAATTTCAAGTTTCCTCTGCTTATACTGTTCGTTCTATATTTTTCCCAGCTTCATCTACTTCAGTTTCACCATGACTTCTTCTCTTCTTTTCCGGTCAAG
ATCGGTCTACTCATCATATCCATCCTCCTCTACACCGAAGAAACAATCCAATTCATGACGAGGATACTGAACCGGTCCGGTTTAGGAGAGGATACGTACG
CCCC


dot-bracket secondary structure
.........((.((((((.((((.((((.((((((..(((((((..((...............(((((....(((((................)))))..
.(((((.((.....................)).))))).)))))...........))..)))))))..))).)))..)))).)))))))))).)).....
....



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt sp|Q9SS39|KCS14_ARATH: 4e-16

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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