ABOUT THIS RECORDspecies: Raphanus sativus var. oleiformis
miRNA family: MIR171
source: miRNEST
Taxonomy by NCBI:
Raphanus sativus var. oleiformis Raphanus sativus Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGCGCCAATATC miRNA* TATTGGCCTGGTTCACTCAGA mismatches: 2 bulges: 0 |
pre-miRNA
TAGCACGAAAGAGTCCTCTTTGATATTGGCCTGGTTCACTCAGATATTCCAGATAACGCACGCACCACATTCTTTCTCTTAGTTATCTGATTGAGCCGCG
CCAATATCTCAGTGCTCTCTCGTCTCTC
dot-bracket secondary structure
....((((.(((((...((..(((((((((.(((((((.(((((((....(((.((.................)).)))....))))))).))))))).)
))))))))..)).))))).)))).....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TAGCACGAAAGAGTCCTCTTTGATATTGGCCTGGTTCACTCAGATATTCCAGATAACGCACGCACCACATTCTTTCTCTTAGTTATCTGATTGAGCCGCG
CCAATATCTCAGTGCTCTCTCGTCTCTC
dot-bracket secondary structure
....((((.(((((...((..(((((((((.(((((((.(((((((....(((.((.................)).)))....))))))).))))))).)
))))))))..)).))))).)))).....
SIMILARITIES| miRBase bra-MIR171e: 1e-41 PMRD bra-miR171e: 1e-41 microPC miR171: 0.00000003 | UniProt no hits RFAM MIR171_1: 2e-34 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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