ABOUT THIS RECORDspecies: Raphanus sativus var. oleiformis
miRNA family: MIR167
source: miRNEST
Taxonomy by NCBI:
Raphanus sativus var. oleiformis Raphanus sativus Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTA miRNA* GATCATGTTTGCAGTTTCACC mismatches: 1 bulges: 0 |
pre-miRNA
CAGGCATCTGATGAAGCTGCCAGCATGATCTAATTAACTTTCTTTCTCCGTTTGTTTTCATGACGATGGAAAGAGATGAGTGTAGATTAGATCATGTTTG
CAGTTTCACCCGTTGACT
dot-bracket secondary structure
(((....))).(((((((((.((((((((((((((.(((((((((.(((..(((((.....))))).))).))))).))))...)))))))))))))).)
))))))))..........
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CAGGCATCTGATGAAGCTGCCAGCATGATCTAATTAACTTTCTTTCTCCGTTTGTTTTCATGACGATGGAAAGAGATGAGTGTAGATTAGATCATGTTTG
CAGTTTCACCCGTTGACT
dot-bracket secondary structure
(((....))).(((((((((.((((((((((((((.(((((((((.(((..(((((.....))))).))).))))).))))...)))))))))))))).)
))))))))..........
SIMILARITIES| miRBase bra-MIR167c: 5e-37 PMRD bra-miR167c: 5e-37 microPC miR167: 4e-47 | UniProt no hits RFAM MIR167_1: 2e-27 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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