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Species belonging to selected taxon:

Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis



ABOUT THIS RECORD

ID: MNEST002437
species: Raphanus sativus var. oleiformis
miRNA family: MIR156
source: miRNEST

Taxonomy by NCBI:
Raphanus sativus var. oleiformis Raphanus sativus Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGACAGAAGAGAGAGAGCACA

miRNA*
 TAGCTCTCTGGTTTAGTGTCCAT

mismatches: 4
bulges: 2
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pre-miRNA
 TGGTGTGGGTTTGACAGAAGAGAGAGAGCACAGTTTGAGTCGCTGCCAATCCCCTTGTAGCTCTCTGGTTTAGTGTCCATAACCTCTG

dot-bracket secondary structure
......(((((.((((.(((..(((((((((((.(((.((....))))).....)))).)))))))..)))..))))...)))))...


SIMILARITIES
miRBase far-MIR529: 0.000000004

PMRD ath-miR156q: 3e-16

microPC miR157: 0.00002		UniProt sp|Q700W2|SPL9_ARATH: 0.000002

RFAM mir-156: 0.0003		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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