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Species belonging to selected taxon:

Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Populus trichocarpa, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST041338
species: Populus trichocarpa
miRNA family: MIR166
source: miRBase, original name: ptc-MIR166q (MI0002234)

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGGACCAGGCTTCATTCCTT

miRNA*
GGAATGTTGTCTGGCTCGAGG

mismatches: 5
bulges: 0

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pre-miRNA
TTAGGTTGAGAGGAATGTTGTCTGGCTCGAGGTCATTGAGGCCATGATTATACAGACATGGCATTACCTGATGACAGCCGAGAAAATTCAAAGTCTGTGT
GTATCTTGTACCTCGATGATTCTCGGACCAGGCTTCATTCCTTCCAACAAA


dot-bracket secondary structure
....((((..(((((((..((((((..((((((((((((((.((.((((((((((((..(((..............)))..((....))...))))))))
).))).))..))))))))).)))))..))))))..)))))))..))))...



SIMILARITIES
miRBase ptc-MIR166p: 2e-21

PMRD ptc-miR166q: 3e-82

microPC miR166: 0.0000001
UniProt no hits

RFAM mir-166: 8e-77

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record

references

[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"




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