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Species belonging to selected taxon:

Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Populus trichocarpa, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST041340
species: Populus trichocarpa
miRNA family: MIR167
source: miRBase, original name: ptc-MIR167b (MI0002236)

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAAGCTGCCAGCATGATCTA

miRNA*
GGTCATGCTGTGACAGCCTCACT

mismatches: 1
bulges: 2

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pre-miRNA
AGGGAAAAAGTGAAGCTGCCAGCATGATCTATCTTTGGTTAGAGAAAGAAAGGACTAACCCTAGCTAGGTCATGCTGTGACAGCCTCACTCCTTCC

dot-bracket secondary structure
..((((..(((((.(((((((((((((((((.((..((((((............))))))..)).)))))))))))).).)))).)))))..))))


SIMILARITIES
miRBase ptc-MIR167d: 2e-26

PMRD ptc-miR167b: 1e-49

microPC miR167: 0.00000000000002
UniProt no hits

RFAM MIR167_1: 2e-48

Identical with: ptc-miR167b from PMRD (MNEST051643)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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references

[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"




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