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Species belonging to selected taxon:

Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Populus trichocarpa, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST051625
species: Populus trichocarpa
miRNA family: MIR166
source: PMRD, original name: ptc-miR166a

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGGACCAGGCTTCATTCCCC

miRNA*
GGAATGTTGTCTGGCTCGAGG

mismatches: 4
bulges: 0

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pre-miRNA
TTTCTTTTGAGGGGAATGTTGTCTGGCTCGAGGTCACTAATGGGATCTATGATTTTATCTCAATTGATTGATTTTCTTTTAAATTCTAGTAAATTGAATT
GAGAGATATCATGATCAACTTATATTTAATGATGTCGGACCAGGCTTCATTCCCCCCAATTGTT


dot-bracket secondary structure
...(..(((.((((((((..((((((..(((.((((..((((.((((.(((((....(((((((...(..((((.((..........)).))))..))))
))))...)))))))))......))))...)))).)))..))))))..)))))))).)))..)..



SIMILARITIES
miRBase ptc-MIR166a: 6e-90

PMRD sly-miR166b: 0.00000000003

microPC miR166: 0.0000000005
UniProt no hits

RFAM mir-166: 3e-83

Identical with: ptc-MIR166a from miRBase (MNEST041322)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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references

[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"




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