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Species belonging to selected taxon:

Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Populus trichocarpa, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST051653
species: Populus trichocarpa
miRNA family: MIR169_3
source: PMRD, original name: ptc-miR169aa

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GAGCCAAGAATGACTTGTCGG

miRNA*
GCCAGGTCGTTCTTGGCTCAA

mismatches: 1
bulges: 0

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pre-miRNA
GTAGAGATCGAGCCAAGAATGACTTGTCGGCAGGCTAGCAATTGCTACGTATAGAGCAATATGTATGCTAGAATGAGTATTCCGCCAGGTCGTTCTTGGC
TCAA
CTTTG


dot-bracket secondary structure
.(((((...(((((((((((((((((.(((((..((((((((((((.(.....))))))).....))))))..))......))).)))))))))))))))
))..
)))))



SIMILARITIES
miRBase ptc-MIR169aa: 3e-57

PMRD ptc-miRf11358-akr: 3e-57

microPC no hits
UniProt no hits

RFAM MIR169_2: 4e-56

Identical with: ptc-MIR169aa from miRBase (MNEST041350)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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references

[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"




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