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Species belonging to selected taxon:

Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Populus trichocarpa, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST002180
species: Populus tremula x Populus alba
miRNA family: MIRf256
source: miRNEST

Taxonomy by NCBI:
Populus tremula x Populus alba Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATCAATGGCCATTGTAAGAGT

miRNA*
TCTTACAGTGCCCATTGATTA

mismatches: 1
bulges: 0

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pre-miRNA
ATAGTTATAACATCTTGATCAATGGCCATTGTAAGAGTAGAAGGATCCATGAAGCAATAACTCTCTTTGCTAAAATGTGTGATAAAACATTGACTCCTGG
TATTTCACTCTTACAGTGCCCATTGATTAAGATGGTATAATGT


dot-bracket secondary structure
...((((((.(((((((((((((((.((((((((((((.((((...(((.(((((((.........)))))..(((((........)))))...)).)))
..)))))))))))))))).))))))))))))))).))))))..



SIMILARITIES
miRBase ptc-MIR475a: 4e-66

PMRD ptc-miRf10050-akr: 2e-74

microPC miR475: 1e-62
UniProt no hits

RFAM MIR475: 5e-38
most similar mature miRNAs

Identical with: miR475 from microPC (MNEST045347)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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