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Species belonging to selected taxon:

Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Populus trichocarpa, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST051652
species: Populus trichocarpa
miRNA family: MIR169
source: PMRD, original name: ptc-miR169a

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CAGCCAAGGATGACTTGCCGA

miRNA*
GGCAAGTTGTCCATGGCTACA

mismatches: 4
bulges: 0

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pre-miRNA
AAGTGGTATGCAGCCAAGGATGACTTGCCGACTTAACTGATCTGTATAAATTAATGCATGTGTAGTCAAAATTACTACTACTATATATTAATCTGATCTG
TGACCACAAATTAACTAACTACTAGCTAGTAATTAGTTGGCAAGTTGTCCATGGCTACATGCTGC


dot-bracket secondary structure
..(..(((((.(((((.(((..(((((((((((..((((....(((...(((((((.(((((((((.......))))).)).)).))))))).((((.((
(....))).))))......)))....))))....)))))))))))..))).))))).)))))..)



SIMILARITIES
miRBase ptc-MIR169a: 2e-90

PMRD ath-miR169a: 0.00000003

microPC miR169: 0.000008
UniProt no hits

RFAM MIR169_2: 3e-89

Identical with: ptc-MIR169a from miRBase (MNEST041349)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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references

[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"




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