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Species belonging to selected taxon:

Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Populus trichocarpa, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST052638
species: Populus trichocarpa
source: PMRD, original name: ptc-miRf10816-akr

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGTGATCCAACTGTTGGATCA

miRNA*
ATCCAACGGTCGGATCAAAAGT

mismatches: 3
bulges: 1

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pre-miRNA
CTTTGAGCGCGATCCAACGGTCGGATCAAAAGTTATGGCCGTTTCAAGGAAAAAGGTCTCCGGAAACTACTTACGAACTATGAGTGTGATCCAACTGTTG
GATCA
AACGTTTTGG


dot-bracket secondary structure
....(((((.(((((((((((.((((((..(.((((((..(((((..(((........))).)))))..(....)..)))))).).)))))).)))))))
)))).
..)))))...



SIMILARITIES
miRBase no hits

PMRD ptc-miRf10394-akr: 4e-53

microPC no hits
UniProt no hits

RFAM no hits

Identical with: ptc-miRf10394-akr from PMRD (MNEST052216)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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