miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Mus musculus, Sus scrofa, Bos taurus, Rattus norvegicus, Xenopus laevis, Gallus gallus, Canis lupus familiaris, Ovis aries, Macaca fascicularis, Anolis carolinensis, Trichosurus vulpecula, Papio anubis, Homo sapiens, Taeniopygia guttata, Peromyscus maniculatus bairdii, Pongo abelii, Ursus americanus, Equus caballus, Oryctolagus cuniculus, Macaca nemestrina, Rana catesbeiana, Cynops pyrrhogaster, Ambystoma tigrinum tigrinum, Cavia porcellus, Bos indicus, Meleagris gallopavo, Lonchura striata domestica, Bos sp., Macropus eugenii, Peromyscus polionotus subgriseus, Capra hircus, Pan troglodytes verus, Macaca mulatta



ABOUT THIS RECORD

ID: MNEST028175
species: Macaca nemestrina
miRNA family: mir-17
source: miRBase, original name: mne-mir-18 (MI0003020)

Taxonomy by NCBI:
Macaca nemestrina Macaca Cercopithecinae Cercopithecidae Cercopithecoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TAAGGTGCATCTAGTGCAGATA

miRNA*
CTGCCCTAAGTGCTCCTTCTG

mismatches: 5
bulges: 1

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pre-miRNA
TGTTCTAAGGTGCATCTAGTGCAGATAGTGAAGTAGATTAGCATCTACTGCCCTAAGTGCTCCTTCTGGCA

dot-bracket secondary structure
.(((..((((.(((..(((.((((.(((((..(.....)..)).))))))).)))..))).))))..))).


SIMILARITIES
miRBase cfa-mir-18a: 7e-35

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

Identical with: ssc-mir-18a from miRBase (MNEST033917)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"




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