miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Schistosoma mansoni, Schistosoma japonicum



ABOUT THIS RECORD

ID: MNEST039032
species: Schistosoma mansoni
miRNA family: let-7
source: miRBase, original name: sma-let-7 (MI0010673)

Taxonomy by NCBI:
Schistosoma mansoni Schistosoma Schistosomatidae Schistosomatoidea Strigeidida Digenea Trematoda Platyhelminthes Acoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GGAGGTAGTTCGTTGTGTGGT

miRNA*
CATACAACCGACTGGCTTTCCCA

mismatches: 2
bulges: 2

View larger
pre-miRNA
TGGGAGGTAGTTCGTTGTGTGGTTTGCTTGTCAAAATGATTAAAGACCATACAACCGACTGGCTTTCCCATT

dot-bracket secondary structure
((((((.(((((.((((((((((((....(((.....)))...)))))))))))).))))).)..)))))..


SIMILARITIES
miRBase sja-let-7: 9e-19

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references

[1] Xue X, Sun J, Zhang Q, Wang Z, Huang Y, Pan W, PLoS One. 3:e4034(2008)., "Identification and characterization of novel microRNAs from Schistosoma japonicum"




Liczniki na strone;