miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Macaca fascicularis, Papio anubis, Homo sapiens, Pongo abelii, Macaca nemestrina, Pan troglodytes verus, Macaca mulatta



ABOUT THIS RECORD

ID: MNEST028226
species: Macaca nemestrina
miRNA family: mir-187
source: miRBase, original name: mne-mir-187 (MI0002819)

Taxonomy by NCBI:
Macaca nemestrina Macaca Cercopithecinae Cercopithecidae Cercopithecoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGTGTCTTGTGTTGCAGCCG

miRNA*
GCTACAACACAGGACCCGGG

mismatches: 4
bulges: 1

View larger
pre-miRNA
GGTCAGGCTCACTATGACACAGTGTGAGACCTCGGGCTACAACACAGGACCCGGGTGCTGCTCTGACCCCTCGTGTCTTGTGTTGCAGCCGGAGGGACGC
AGGTCCGCA


dot-bracket secondary structure
((.(..((.((((.......)))).....((((.((((.((((((((((((.(((..(......)..)))..).))))))))))).)))).))))...))
..).))...



SIMILARITIES
miRBase mml-mir-187: 3e-57

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-187: 9e-39

Identical with: mml-mir-187 from miRBase (MNEST027778)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references

[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"




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