miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Macaca fascicularis, Papio anubis, Homo sapiens, Pongo abelii, Macaca nemestrina, Pan troglodytes verus, Macaca mulatta



ABOUT THIS RECORD

ID: MNEST028230
species: Macaca nemestrina
miRNA family: mir-198
source: miRBase, original name: mne-mir-198 (MI0002922)

Taxonomy by NCBI:
Macaca nemestrina Macaca Cercopithecinae Cercopithecidae Cercopithecoidea Catarrhini Simiiformes Haplorrhini Primates Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GGTCCAGAGGGGAAATAGG

miRNA*
TGTGATTTTTCCTTCTTCTCTGTAGAATAA

mismatches: 3
bulges: 11

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pre-miRNA
TCATTGGTCCAGAGGGGAAATAGGTTCCTGTGATTTTTCCTTCTTCTCTGTAGAATAAATGA

dot-bracket secondary structure
(((((..((((((((((((((((....)))).........))))))))))..))...)))))


SIMILARITIES
miRBase mml-mir-198: 1e-29

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-198: 3e-28

Identical with: mml-mir-198 from miRBase (MNEST027794)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
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references

[1] Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E, Cell. 120:21-24(2005)., "Phylogenetic shadowing and computational identification of human microRNA genes"




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