miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Petunia axillaris subsp. axillaris, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Capsicum annuum, Solanum tuberosum



ABOUT THIS RECORD

ID: MNEST054665
species: Solanum tuberosum
miRNA family: MIR168
source: PMRD, original name: stu-miR168

Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGCTTGGTGCAGGTCGGGAC

miRNA*
CCCGCCTTGCATCAACTGA

mismatches: 2
bulges: 0

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pre-miRNA
TCGCTTGGTGCAGGTCGGGACCTACCTCGCCGGCAACAATGGCGGTAGCTGACGGCGACGGCAGCTTACCGGTAAAAACTTTTTTTTTTTACATGTCTGT
GGCGTAGTTTGGGTCCCGCCTTGCATCAACTGA


dot-bracket secondary structure
(((.((((((((((.(((((((((.(((((((.(((((....(((((((((.((....)).)))).)))))(((((((.......))))))).))).)))
)))).))..))))))))).)))))))))).)))



SIMILARITIES
miRBase ptc-MIR168b: 0.0001

PMRD sly-miR168: 0.000006

microPC miR168: 7e-52
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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