miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Petunia axillaris subsp. axillaris, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Capsicum annuum, Solanum tuberosum



ABOUT THIS RECORD

ID: MNEST054669
species: Solanum tuberosum
miRNA family: MIR403
source: PMRD, original name: stu-miR403

Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CTAGATTCACGCACAAACTCG

miRNA*
CGTTTGTGCGTGAATCTAACA

mismatches: 4
bulges: 0

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pre-miRNA
GGAAGAGGCATATTTCACGTTTGTGCGTGAATCTAACAACCCTTTTCATCAGAAAAACTGTTGTTGTTTGCTAGATTCACGCACAAACTCGTAATATGTA
TTTTTC


dot-bracket secondary structure
((((((.(((((((....((((((((((((((((((((((..(((((....)))))...))))).......)))))))))))))))))....))))))).
))))))



SIMILARITIES
miRBase tcc-MIR403a: 0.0000003

PMRD sly-miR403: 3e-41

microPC miR403: 7e-36
UniProt no hits

RFAM MIR403: 0.0000004

Identical with: miR403 from microPC (MNEST045272)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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