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Species belonging to selected taxon:

Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Petunia axillaris subsp. axillaris, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Capsicum annuum, Solanum tuberosum



ABOUT THIS RECORD

ID: MNEST007363
species: Solanum tuberosum
miRNA family: miR168a
source: miRNEST

Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CCCGCCTTGCATCAACTGAAT

miRNA*
TCGCTTGGTGCAGGTCGGGAC

mismatches: 2
bulges: 0

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pre-miRNA
CGGCCTCTCATTCGCTTGGTGCAGGTCGGGACCTACCTCGCCGGCAACAATGGCGGTAGCTGACGGCGACGCCAGCGTACCGGTAAAAACTAATTTTTTA
CATGTTGTCTGTGGCGTAGTTTGGGTCCCGCCTTGCATCAACTGAATAGGAGACTGCG


dot-bracket secondary structure
(((.((((.(((((.((((((((((.((((((((((..(((((((((((....(((((((((.((....)).)))).)))))(((((((.....))))))
).)))))))...))))..))..)))))))).)))))))))).))))).)))).)))..



SIMILARITIES
miRBase crt-MIR168: 0.0000001

PMRD stu-miR168: 9e-49

microPC miR168: 5e-72
UniProt no hits

RFAM MIR168: 0.000002
most similar mature miRNAs

Identical with: miR168 from microPC (MNEST044885)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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