miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Petunia axillaris subsp. axillaris, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Capsicum annuum, Solanum tuberosum



ABOUT THIS RECORD

ID: MNEST007374
species: Solanum tuberosum
miRNA family: MIR167
source: miRNEST

Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TAAAGCTGCCAGCATGATCTG

miRNA*
GGTCATCTAGCAGCTTCAAT

mismatches: 2
bulges: 1

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pre-miRNA
GTTTCGTGTTTTTGTATCTGTATGTTGGTTTTTGAGAGGTTAAAGCTGCCAGCATGATCTGGTAAGAACAAAATCCAATTATTTTTCATCTATATTTTCT
TACAAAGAAGAAATGAATTTAAAGTTGATTTTTTTAAAAAAAATATAAATTCTTGAGGTTTTTAATTTCCTTCTTTTGGATTTGAAAAAAGAAAATTAAA
TTTTGTAAGGATTTATTTCTTTGAAGAAAATATAGATAGATAGTTTTGGTTCCATCAGGTCATCTAGCAGCTTCAATCACTCACCAACAATACACACAAA
GGAAGAAAAAAAAA


dot-bracket secondary structure
.((((...(((((((...(((((((((((....(((.((((.(((((((.((.((((((((((..((((..((...((((((((...(((((((((((((
(.((((((((.(((.........))).(((((((...))))))).((((((((((.((..((((((((.(((.((((......)))).))).))))))))
..)).)))))))))))))))))))))))))))))))))))))))))).)))).)))))))))))).))))))).)))).))))))))).))))).)))))
))..))))......



SIMILARITIES
miRBase gma-MIR167c: 0.0000000003

PMRD ppl-miR167b: 0.00000000000002

microPC miR167: 0.0003
UniProt no hits

RFAM MIR167_1: 0.00000000008
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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