miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Petunia axillaris subsp. axillaris, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Capsicum annuum, Solanum tuberosum



ABOUT THIS RECORD

ID: MNEST007391
species: Solanum tuberosum
miRNA family: MIRf341
source: miRNEST

Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CTACTCCCTCCGTCCCATTTT

miRNA*
AATGGGACGGAGGGAGTACTT

mismatches: 1
bulges: 0

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pre-miRNA
TTATGTATATTCTACTCCCTCCGTCCCATTTTATGTGGCACCATTTCCTTTTTGGTCAGTCCCAAAAAGAATGTCACATTTTCTTATATGGTAAGTATTT
AAAGGTACAATTCCTCTTTTACCCTTGTTGGTTCCACTTAATCTTAAAGAAAGTATTCCAATACATTTATGAGGAGAGAGAAAAATGAGTCTACTTTTTA
ATATGACTATTTTTTGAAGGGACAATTTGGTAAACATTTCAAAGTCTTCATTTATTTCTTAAACTCCGTGCCCGGTCAAATGTTGCCACATAAAATGGGA
CGGAGGGAGTACTT
AATTTGTT


dot-bracket secondary structure
............((((((((((((((((((((((((((((.(((((.((((((((......))))))))..((((....((((....(((((..(((((.
(((((((..((((.((((((.((..((((((....((((..(((...)))))))...))))))((....)).)).)))))).....)))).))))))).)
)))).))))).....)))).))))(((.((((....................................)))).))).))))).)))))))))))))))))
)))))))))))...
........



SIMILARITIES
miRBase osa-MIR812h: 0.00007

PMRD osa-miR812h: 0.00007

microPC no hits
UniProt no hits

RFAM MIR1122: 0.00002
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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