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Species belonging to selected taxon:
Ipomoea batatas
,
Nicotiana benthamiana
,
Nicotiana langsdorffii x Nicotiana sanderae
,
Nicotiana tabacum
,
Petunia axillaris subsp. axillaris
,
Solanum habrochaites
,
Solanum lycopersicum
,
Solanum melongena
,
Solanum pennellii
,
Solanum torvum
,
Capsicum annuum
,
Solanum tuberosum
,
Ipomoea nil
ABOUT THIS RECORD
ID:
MNEST001277
species:
Ipomoea batatas
miRNA family:
MIR2911
source:
miRNEST
Taxonomy by NCBI:
Ipomoea batatas
Ipomoea
Ipomoeeae
Convolvulaceae
Solanales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GGCCGGGGGACGGACTGGGAA
miRNA*
CCCAGTCCCGAACCCGTCGG
mismatches:
5
bulges:
1
View larger
pre-miRNA
TCTGAGGGCTGGGCACGGGGGT
CCCAGTCCCGAACCCGTCGG
CTGTTCGGCGGACTGCTCGAGCTGCTTCCGCGGCGAGAGCGGGTCGCCGCGTGCC
GGC
CGGGGGACGGACTGGGAA
CGGCTCCTTCGGGGGCCTT
dot-bracket secondary structure
((((...((...)).))))..(
((((((((....((((((((
(....((((((.((((((..(((((....)))))..)))))).))))))...)))
)).
))))....))))))))).
.((((((....))))))..
SIMILARITIES
miRBase
peu-MIR2911
:
9e-33
PMRD
peu-miR2911
:
9e-33
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record