miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Ipomoea batatas, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Petunia axillaris subsp. axillaris, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Capsicum annuum, Solanum tuberosum, Ipomoea nil

ABOUT THIS RECORD

ID: MNEST045025
species: Solanum tuberosum
source: microPC, original name: miR394

Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
TTGGCATTCTGTCCACCTCC

miRNA*
AGGTGGGCATACTGCCAA

mismatches: 3
bulges: 0

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pre-miRNA
TTGGCATTCTGTCCACCTCCCTCGGTTCTTTTTCGAAAAAAGGAGGAGGAAAGCAAGATTAATGTGGAGGTGGGCATACTGCCAA

dot-bracket secondary structure
.(((((.(.(((((((((((..((.(((((((((........)))))))))...........)).))))))))))).).))))).

UniProt no hits

RFAM MIR394: 0.00007

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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